1Department of Biological Sciences, Stanford University, Stanford, CA, USA. 2Department of Microbiology, University of Hong Kong, Hong Kong SAR, China. 3Department of Biochemistry, University of Hong Kong, Hong Kong SAR, China. 4Department of Biology, University of Ottawa, Ottawa, Ontario, Canada.
Abstract: MBEToolbox is an extensible MATLAB-based software package for analysis of DNA and protein sequences. MBEToolbox version 2.0 includes enhanced functions for phylogenetic analyses by the maximum likelihood method. For example, it is capable of estimating the synonymous and nonsynonymous substitution rates using a novel or several known codon substitution models. MBEToolbox 2.0 introduces new functions for estimating site-specific evolutionary rates by using a maximum likelihood method or an empirical Bayesian method. It also incorporates several different methods for recombination detection. Multi-platform versions of the software are freely available at http://www.bioinformatics.org/mbetoolbox/.
PDF (183.53 KB PDF FORMAT)
RIS citation (ENDNOTE, REFERENCE MANAGER, PROCITE, REFWORKS)
BibTex citation (BIBDESK, LATEX)
I must say publishing with Evolutionary Bioinformatics was a great and partially unexpected experience. It allowed me to understand the name 'Libertas Academica' is not just a name but a real issue. The reviewers offered us stringent, rigorous but totally unprejudiced comments, the editor supported us and the paper visibility was very good. Thank you again.
All authors are surveyed after their articles are published. Authors are asked to rate their experience in a variety of areas, and their responses help us to monitor our performance. Presented here are their responses in some key areas. No 'poor' or 'very poor' responses were received; these are represented in the 'other' category.See Our Results
Copyright © 2013 Libertas Academica Ltd (except open access articles and accompanying metadata and supplementary files.)